Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015899007.1_cds_XP_016448944.1_43550
CDS Infomation

[gene=LOC107774015] [db_xref=GeneID:107774015] [protein=pentatricopeptide repeat-containing protein At4g21065-like] [protein_id=XP_016448944.1] [location=10696..12591] [gbkey=CDS]
Sequence

ATGTTCAAATCCAAAACCCCAAAGACATTTCCCTCCAACAATGCAACACTTCGTTATTCT
TCAGCTACCTCCCTAGTTGACCCCACAACTCATCAAGAACTGCATCAACATACCTTTTCA
AATCAACCGAACGACATTTCACAAACACCAACTTCACAATTTTCTCAATATTTGGACCCA
AGATTCTATCTTTCTCAACTTTTAAATTGTAAAAGTCTTTATCAGGTAAAGCAGGTTCAT
GCTCAGATAACAACTAATGGATTAATTAAAAACCAAATTGTTGCTAACAAACTTTTATAC
ATATACAGTTTGCATAAGTCTTTGGATTATGCTTATGCCTTGTTTTGTAGTTTGAGTGGA
AAAAATGCTGTTTCTTGGAGTGTTATGATTGGTGGTTATGCTAAAGCTGGTGAGTTTATC
AACAGCTTAAGGACTTTTAGGGAGTATTTAAGATCTGGGGATAAACCAGATAATTATACT
TTGCCTTTTTTGATTAGGGTATGTAGGGATACAATGGACCTTCAAATGGGTAGAAAGATT
CATAATGTTGTTTACAAAAATGGGTTGCAATCAGATGTTTTTGTGGTTGCAGCACTTGTG
GATATGTATTCAAAATGTAAGGTTATTGGTGATGCAAAACAGTTGTTTGATAAAATGCCT
AAGAGGGACCTTGTGACTTGGACAGTCATGATTGGAGCGTGTACGGAGTGTGGGGATCCG
AGTGAGGCTTTAGTTTTGTTTGATCAAATGAGAGAGGAAGATGTTGTCCCAGATAAAGTT
GCTCTCGTAAATGTAGTAAATGCTTGTGCAAAGACGGGGGCAATGCATAAGGCTAAGGTT
TTACATGAATATATAGTGAGGAATAAGTTTTCGTTGGATGTTATCTTGGGGACGGCAATG
GTTGACATGTATGCTAAATGTGGATCTGTTGATGTTGCTAGAGAAGTGTTTGATGGTTTG
AGAGAAAAGAATGTTATAACTTGGAGCGCGATGATAGGGGCGTATGGTTATCACGGCCAA
GGCCACGAAGCTATTGATATGTTCCCTATGATGTTAAGGAGCGGGATATTGCCTAACAAG
ATCACATTTGTTTCTCTTTTGTATGCGTGTAGTCACAGTGGGCTGGTTGAAGAAGGTAAA
CGGCTTTTTAATTCTATGCAGAACGAATATGGAGTGAAGCCGGATATTAAACATTTTACT
TGTATGGTGGACCTCTTGGGCCGTGCTGGGAAAATTGACGAGTCGTTAGAGTTAATAGAT
CATATGGCCGTTGAAAAAGATGAAGGGCTTTGGGGGGCATTACTCGGAGCGTGTAGAATT
CATGGCCATGTAGAGCTTGCAGAAAAGGCAGCAAAATCCTTGATTGAATTGCAACCTCAA
AATCCAGGACATTATGTTTTGCTTTCAAATATATATGCGAAAGCAGGTAAATGGCAAGAC
GTGGCCAAGATTAGGGAATTAATGACCCATCAGAAATTGAAGAAAATTCCTGGTTGGACA
TGGATTGAAGTTGATAACAAGATTCATCGATTTAGCGTTGGAGACCACACCCATCATCAA
TCAAAGGAGATATACGAGAAGTTGAAATGTCTGCTCGAGGAATTAGAGGCTGCTGGTTAT
GTCCCTGATACAAACTTTGTGTTGCATGATGTTGATGAGGAACTTAAGCTTGGAAACCTG
TTCTCCCATAGTGAAAAGTTGGCTATTGCATTTGGCCTCATAAGCACACCTGAGCATTCT
ACTATTAGAATTATGAAGAACCTTAGAGTATGTGGTGACTGTCACACATTTTGTAAGTTT
GTTTCTCAGATTACAAGTAGGGTGATTGTTGTTCGTGACGCAAATCGGTTTCACCACTTT
AAGGAAGGTGCCTGTTCTTGTGGAGATTATTGGTGA

Peptide Sequence

PEP ID

XP_016448944.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Nicotiana tabacum]
Sequence

MFKSKTPKTFPSNNATLRYSSATSLVDPTTHQELHQHTFSNQPNDISQTPTSQFSQYLDP
RFYLSQLLNCKSLYQVKQVHAQITTNGLIKNQIVANKLLYIYSLHKSLDYAYALFCSLSG
KNAVSWSVMIGGYAKAGEFINSLRTFREYLRSGDKPDNYTLPFLIRVCRDTMDLQMGRKI
HNVVYKNGLQSDVFVVAALVDMYSKCKVIGDAKQLFDKMPKRDLVTWTVMIGACTECGDP
SEALVLFDQMREEDVVPDKVALVNVVNACAKTGAMHKAKVLHEYIVRNKFSLDVILGTAM
VDMYAKCGSVDVAREVFDGLREKNVITWSAMIGAYGYHGQGHEAIDMFPMMLRSGILPNK
ITFVSLLYACSHSGLVEEGKRLFNSMQNEYGVKPDIKHFTCMVDLLGRAGKIDESLELID
HMAVEKDEGLWGALLGACRIHGHVELAEKAAKSLIELQPQNPGHYVLLSNIYAKAGKWQD
VAKIRELMTHQKLKKIPGWTWIEVDNKIHRFSVGDHTHHQSKEIYEKLKCLLEELEAAGY
VPDTNFVLHDVDEELKLGNLFSHSEKLAIAFGLISTPEHSTIRIMKNLRVCGDCHTFCKF
VSQITSRVIVVRDANRFHHFKEGACSCGDYW

Transcript Sequence

Gene sequence data has not been registered.